Année 2022

Alain, K., Aronson, H.D., Allioux, M., Yvenou, S. & Amend, A. (2022). Sulfur disproportionation is exergonic in the vicinity ofmarine hydrothermal vents. Environmental Microbiology, 24(5), 2210-2219.  Doi.org/10.1111/1462-2920.15975

Allioux, M., Yvenou, S., Merkel, A., Cozannet, M., Aube, J., Pommellec, J., Le Romancer, M., Lavastre, V., Guillaume, D. & Alain, K. (2022). A metagenomic insight into the microbiomes of geothermal springs in the subantarctic Kerguelen Islands. Scientific Reports. 12, 22243. Doi.org/10.1038/s41598-022-26299-4

Allioux, M., Yvenou, S., Merkel, A., Cozannet, M., Aube, J., Le Romancer, M., Lavastre, V., Guillaume, D., Alain, K. (2022). Metagenome-assembled genomes reveal many novel microbial lineages in the geothermal springs of the subantarctic Kerguelen Islands. Preprint Research Square Platform LLC, 2022-01 , P. Version 1 (15p.) Doi : 10.21203/rs.3.rs-1525368/v1

Allioux,  M., Yvenou, S., Godfroy, A., Shao, Z., Jebbar, M., Alain, K. (2022). Genome analysis of a new sulphur disproportionating species Thermosulfurimonas strain F29 and comparative genomics of sulfur-disproportionating bacteria from marine hydrothermal vents. Microbial Genomics, Volume 8, Issue 9 Doi : 10.1099/mgen.0.000865

Aubé, J., Cambon-Bonavita, M-A., Velo-Suárez, L., Cueff-Gauchard, V., Lesongeur, F., Guéganton, M., Durand, L., Reveillaud, J. (2022). A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata. Doi : 10.21203/rs.3.rs-1584541/v1

Bellec, L., Le Du-Carré, J., Almeras, F., Durand, L., Cambon-Bonavita, M-A., Danion, M., Morin, T. (2022). Glyphosate-based herbicide exposure: effects on gill microbiota of rainbow trout (Oncorhynchus mykiss) and the aquatic bacterial ecosystem. Sous presse, FEMS Microbiology Ecology (0168-6496) (Oxford University Press (OUP). Doi : 10.1093/femsec/fiac076

Besnard, L., Duchatelet, L., Bird, C. S., Le Croizier, G., Michel, L., Pinte, N., Lepoint, G., Schaal, G., Vieira, R., P., Gonçalves Jorge M.S., Martin Ulrich, Mallefet Jérôme (2022). Diet consistency but large-scale isotopic variations in a deep-sea shark: The case of the velvet belly lantern shark, Etmopterus spinax, in the northeastern Atlantic region and Mediterranean Sea. Deep Sea Research Part I: Oceanographic Research Papers, 182, 103708 (11p.). Doi.org/10.1016/j.dsr.2022.103708

Boulart, C., Rouxel, O., Scalabrin, C., Le Meur, P., Pelleter, E., Poitrimol, C., Thiebaut, E., Matabos, M., Castel, J., Tran Lu y, A., Michel, L., Cathalot, C., Chéron, S., Boissier, A., Germain, Y., Guyader, V., Arnaud-Haond, S., Bonhomme, F., Broquet, T., Cueff-Gauchard, V., Le Layec, V., L’haridon, S., Mary, J., Le Port, A-S., Tasiemski, A., Kuama Darren, C., Hourdez, S., Jollivet, D. (2022). Active hydrothermal vents in the Woodlark Basin may act as dispersing centres for hydrothermal fauna. Communications Earth & Environment. (2662-4435) (Springer Science and Business Media LLC), 2022-12 , Vol. 3 , N. 1 , P. 64 (16p.) Doi : 10.1038/s43247-022-00387-9

Cario, A., Larzilliere, M., Nguyen, O., Alain, K. & Marre, S. (2022). High-pressure microfluidics for ultra-fast microbial phenotyping. Frontiers in Microbiology. 13, 866681. doi : org/10.3389/fmicb.2022.866681

Castel, J., Hourdez, S., Pradillon, F., Daguin-Thiébaut, C., Ballenghien, M., Ruault, S., Corre, E., Tran Lu y, A., Mary, J., Gagnaire, P-A., Bonhomme, F., Breusing, C., Broquet, T., Jollivet, D. (2022). Inter-specific genetic exchange despite strong divergence in deep-sea hydrothermal vent gastropods of the genus Alviniconcha. Genes (2073-4425) (MDPI AG), 2022-06 , Vol. 13 , N. 6 , P. 985 (26p.). Doi : 10.3390/genes13060985

Cepeda Gomez, D., Sanchez, N., Olu, K., Zeppilli, D. (2022). Ryuguderes casarrubiosi sp. nov., a new deep-sea representative of the enigmatic genus Ryuguderes (Kinorhyncha: Cyclorhagida: Campyloderidae) from the Indian Ocean.  Zoologischer Anzeiger (0044-5231) (Elsevier BV), 2022-09 , Vol. 300 , P. 92-101 Doi : 10.1016/j.jcz.2022.08.001

Cepeda Gomez, D., Gayet, N., Spedicato, A., Michaud, E., Zeppilli, D. (2022). Two new species of the Echinoderes coulli-group (Kinorhyncha: Cyclorhagida: Echinoderidae) from a low human-impacted mangrove swamp in French Guiana (western Atlantic Ocean). Zoologischer Anzeiger (0044-5231) (Elsevier BV), 2022-11 , Vol. 301 , P. 179-195. Doi : 10.1016/j.jcz.2022.10.008.

Cheng, R., Li, X., Jiang, L., Gong, L., Geslin, C., Shao, Z. (2022). Virus diversity and interactions with hosts in deep-sea hydrothermal vents. Microbiome. 10(1):235. Doi: 10.1186/s40168-022-01441-6

Cordier, T., Angeles, I. B., Henry, N., Lejzerowicz, F., Berney, C., Morard, R., Brandt, A., Cambon-Bonavita, M-A., Guidi, L., Lombard, F., Arbizu, P. M., Massana, R., Orejas, C., Poulain, J., Smith, C. R., Wincker, P., Arnaud-Haond, S., Gooday, A. J., de Vargas, C., Pawlowski, J. (2022). Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Science Advances (2375-2548) (American Association for the Advancement of Science (AAAS)), 2022-02 , Vol. 8 , N. 5 , P. eabj9309 (14p.). Doi : 10.1126/sciadv.abj9309

Coste, F., Goffinont, S., Cros, J., Gaudon, V., Guerin, M., Garnier, N., Confalonieri, F., Flament, D., Suskiewicz, M. J., Castaing, B. (2022). Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Research (0305-1048) (Oxford University Press (OUP)), 2022-10 , Vol. 50 , N. 19 , P. 11072-11092. Doi : 10.1093/nar/gkac932

Dewolf, E., Brock, M.T., Calder, W.J., Kliebenstein, D.J., Katz, E., Li, B.H., Morrison, H.G., Maignien, L., Weinig, C. (2022). The rhizosphere microbiome and host plant glucosinolates exhibit feedback cycles in Brassica rapa. Molecular Ecology, 2022.00:1–11.  Doi : 10.1111/mec.16782

Forget, A., Regnacq, M., Orain, C., Touzé, E., Lelong, E., Brandily, C., Bernard, H., Tripier, R., Le Poul, N. (2022). Electrocataytic reduction of CO2 in water by a C-functionalized Ni-cyclam complex grafted onto carbon. Chemical Communications (1359-7345) (Royal Society of Chemistry (RSC), 2022 , Vol. 58 , N. 48 , P. 6785-6788. Doi : 10.1039/D2CC01667B

Georgieva, M.N., Little, C.T.S., Herrington, R.J., Boyce, A.J., Zerkle, A.L., Maslennikov, V.V., Glover, A.G.  (2022). Sulfur isotopes of hydrothermal vent fossils and insights into microbial sulfur cycling within a lower Paleozoic (Ordovician-early Silurian) vent community. Geobiology (1472-4677) (Wiley), 2022-07, Vol. 20 , N. 4 , P. 465-478. Doi : org/10.1111/gbi.12495

Giunta, T., Young, E. D., Labidi, J., Sansjofre, P., Jézéquel, D., Donval, J-P., Brandily, C., Ruffine, L. (2022). Extreme methane clumped isotopologue bio-signatures of aerobic and anaerobic methanotrophy: insights from the Lake Pavin and the Black Sea sediments. Geochimica Et Cosmochimica Acta (0016-7037) (Elsevier BV), 2022-12 , Vol. 338 , P. 34-53. Doi : 0.1016/j.gca.2022.09.034

González-Casarrubios, A., García-Cobo, M., Sánchez‍, N., Cepeda Gomez, D., Sánchez-Almazán, J. I., Pardos, F. (2022). Towards the creation of a reference collection of the Spanish kinorhynch fauna (Scalidophora: Kinorhyncha) in the National Museum of Natural Sciences of Madrid (MNCN-CSIC). Graellsia (0367-5041) (Editorial CSIC), 2022-10-13 , Vol. 78 , N. 2 , P. e177 (11p.). Doi : 10.3989/graellsia.2022.v78.359

Guéganton, M., Rouxel, O., Durand, L., Cueff-Gauchard, V., Gayet, N., Pradillon, F., Cambon-Bonavita, M-A. (2022). Anatomy and Symbiosis of the Digestive System of the Vent Shrimp Rimicaris Exoculata and Rimicaris Chacei Revealed Through Imaging Approaches. Frontiers in Marine Science ("2296-7745") (Frontiers Media SA), 2022-06-20 , Vol. 9 , P. 903748 (14p.) Doi : 10.3389/fmars.2022.903748

Hernandez, I., Cambon-Bonavita, M-A., Sarrazin, J., Pradillon, F. (2022). Population structure and reproduction of the alvinocaridid shrimp Rimicaris exoculata on the Mid-Atlantic Ridge: Variations between habitats and vent fields. Deep-sea Research Part I-oceanographic Research Papers , 186, 103827 (14p.). Doi.org/10.1016/j.dsr.2022.103827

Hogrel, G., Marino‐Puertas, L., Laurent, S., Ibrahim, Z., Covès, J., Girard, E., Gabel, F., Fenel, D., Daugeron, M‐C., Clouet‐d'Orval, B., Basta, T., Flament, D., Franzetti, B. (2022). Molecular Microbiology (0950-382X) (Wiley), 2022-07 , Vol. 118 , N. 1-2 , P. 16-29. Doi : 10.1111/mmi.14948

Klasek Scott, A., Brock, M. T., Calder, W. J., Morrison, H.G., Weinig, C., Maïgnien, L. (2022). Spatiotemporal heterogeneity and intragenus variability in Rhizobacterial associations with Brassica rapa growth. mSystems (2379-5077) (American Society for Microbiology), 2022-06-28 , Vol. 7 , N. 3 , P. 18p. Doi : 10.1128/msystems.00060-22

Konn, C., Donval, J-P., Guyader, V., Germain, Y., Alix, A-S., Roussel, E., Rouxel, O. (2022). Extending the dataset of fluid geochemistry of the Menez Gwen, Lucky Strike, Rainbow, TAG and Snake Pit hydrothermal vent fields: Investigation of temporal stability and organic contribution. Deep-sea Research Part I-oceanographic Research Papers, 179, 103630 (26p.).  Doi.org/10.1016/j.dsr.2021.103630

Lantéri, N., Ruhl, H. A., Gates, A., Martínez, E., Del Rio Fernandez, J., Aguzzi, J., Cannat, M., Delory, E., Embriaco, D., Huber, R., Matabos, M., Petihakis, G., Reilly, K., Rolin, J-F., Van Der Schaar, M., André, M., Blandin, J., Cianca, A., Francescangeli, M., Garcia, O., Hartman, S., Lagadec, J., R., Legrand, J., Pagonis, P., Piera, J., Remirez, X., Toma, D. M., Marinaro, G., Moreau, B., Santana, R., Wright, H., Dañobeitia, J., J., Favali, P. (2022). The EMSO Generic Instrument Module (EGIM): Standardized and Interoperable Instrumentation for Ocean Observation. Frontiers in Marine Science, 9, 801033 (17p.). Doi : org/10.3389/fmars.2022.801033

Lemonnier, C., Chalopin, M., Huvet, A., Le Roux, F., Labreuche, Y., Petton, B., Maignien, L., Paul-Pont, I., Reveillaud, J. (2022). Time-series incubations in a coastal environment illuminates the importance of early colonizers and the complexity of bacterial biofilm dynamics on marine plastics. Environmental Pollution, 312, 119994 (11p.). Doi.org/10.1016/j.envpol.2022.119994

Le Bourg, B., Saucède, T., Charpentier, A., Lepoint, G., Michel, L. (2022). What is the menu today in a subantarctic kelp food web from the Kerguelen Islands? Phytodetritus, phytoplankton and phytobenthos; not living kelp. Marine Biology (0025-3162) (Springer Science and Business Media LLC), 2022-09 , Vol. 169 , N. 9 , P. 118 (16p.) Doi : 10.1007/s00227-022-04105-z

Matabos, M., Barreyre, T., Juniper, S.K., Cannat, M., Kelley, D., Alfaro-Lucas, J.M., Chavagnac, V., Colaço, A., Escartin, J., Escobar, E., Fornari, D., Hasenclever, J., Huber, J.A., Laës-Huon, A., Lantéri, N., Levin, L.A., Mihaly, S., Mittelstaedt, E., Pradillon, F., Sarradin, P-M., Sarrazin, J., Tomasi, B., Venkatesan, R. and Vic, C. (2022) Integrating Multidisciplinary Observations in Vent Environments (IMOVE): Decadal Progress in Deep-Sea Observatories at Hydrothermal Vents. Front. Mar. Sci. 9:866422. Doi: 10.3389/fmars.2022.866422

Methou, P., Hernández-Ávila, I., Cathalot, C., Cambon-Bonavita, M-A., Pradillon, F. (2022). Population structure and environmental niches of Rimicaris shrimps from the Mid-Atlantic Ridge. Marine Ecology Progress Series, 684, 1-20. Doi : 10.3354/meps13986

Methou, P., Chen, C., Kayama Watanabe, H., Cambon-Bonavita, M-A., Pradillon, F. (2022). Reproduction in deep-sea vent shrimps is influenced by diet, with rhythms apparently unlinked to surface production. Ecology and Evolution. 12(7):e9076. Doi: 10.1002/ece3.9076. PMID: 35866019; PMCID: PMC9288886.

Moreau, C., Le Bourg, B., Balazy, P., Danis, B., Eléaume, M., Jossart, Q., Kuklinski, P., Lepoint, G., Saucède, T., Van De Putte, A., Michel, L. (2022). Trophic markers and biometric measurements in Southern Ocean sea stars (1985‐2017). Ecology, 103(3), e3611 (2p.). Doi : 10.1002/ecy.3611

Nmor, S. I., Viollier, E., Pastor, L., Lansard, B., Rabouille, C., Soetaert, K. (2022). FESDIA (v1.0): exploring temporal variations of sediment biogeochemistry under the influence of flood events using numerical modelling. Geoscientific Model Development (1991-959X) (Copernicus Gesellschaft Mbh), 2022-10 , Vol. 15 , N. 19 , P. 7325-7351. Doi :10.5194/gmd-15-7325-2022

Poitrimol, C., Thiébaut, É., Daguin-Thiébaut, C., Le Port, A-S., Ballenghien, M., Tran Lu y, A., Jollivet, D., Hourdez, S., Matabos, M. (2022). Contrasted phylogeographic patterns of hydrothermal vent gastropods along South West Pacific: Woodlark Basin, a possible contact zone and/or stepping-stone. Plos One (1932-6203) (Public Library of Science (PLoS), 2022-10-05 , Vol. 17 , N. 10 , P. e0275638 (27p.). Doi : 10.1371/journal.pone.0275638

Ponsford, J.C.B., Hubbard, C.J., Harrison, J.G., Maignien, L., Buerkle, C.A., Weinig, C. (2022). Whole-Genome Duplication and Host Genotype Affect Rhizosphere Microbial Communities. mSystems. 2022 Jan 11;7(1):e0097321. doi: 10.1128/msystems.00973-21. PMID: 35014873; PMCID: PMC8751390

Puccinelli, E., Zeppilli, D., Stefanoudis Paris, V., Wittische-Helou, A., Kermorgant, M., Fuchs, S., Menot, L., Easton Erin, E., Weber Alexandra, A-T. (2022). Hybrid conferences : opportunities, challenges and ways forward. Frontiers in Marine Science. (2296-7745) (Frontiers Media SA), 2022-07, Vol. 9, P. 902772 (13 p.). Doi : 10.3389/fmars.2022.902772

Ramirez-Llodra, E., Argentino, C., Baker, M., Boetius, A., Costa, C., Dahle, H., Denny, E.M., Dessandier, P.-A., Eilertsen, M.H., Ferre, B., German, C.R., Hand, K., Hilário, A., Hislop, L., Jamieson, J.W., Kalenitchenko, D., Mall, A., Panieri, G., Purser, A., Ramalho, S.P., Reeves, E.P., Rolley, L., Pereira, S.I., Ribeiro, P.A., Sert, M.F., Steen, I.H., Stetzler, M., Stokke, R., Victorero, L., Vulcano, F., Vågenes, S., Waghorn, K.A., Buenz, S. (2022) Hot vents beneath an icy ocean: The Aurora Vent Field, Gakkel Ridge, revealed. Oceanography, Doi.org/10.567/oceanog.2023.103

Rebecchi, F., Zeppilli, D., Baldrighi, E., Di Cosmo, A., Polese, G., Pisaniello, A., Grall, J. (2022). First insights into the meiofauna community of a maerl bed in the Bay of Brest (Brittany) / Primeros conocimientos sobre la comunidad meiofáunica del lecho de maerl en la bahía de Brest (Bretaña). Scientia Marina, 86(1), e024 (17p.). Doi : 10.3989/scimar.05230.024

Reddin, C., J., Decottignies, P., Bacouillard, L., Barille, L., Dubois, S., Echappe, C., Gernez, P., Jesus, B., Meleder, V., Natscher, P. S., Turpin, V., Zeppilli, D., Zwerschke, N., Brind'Amour, A., Cognie, B. (2022). Extensive spatial impacts of oyster reefs on an intertidal mudflat community via predator facilitation. Communications Biology, 5, 250 (11p.). Doi : 10.1038/s42003-022-03192-4

Sarrazin, J., Cathalot, C., Laes, A., Marticorena, J., Michel, L., Matabos, M. (2022). Integrated Study of New Faunal Assemblages Dominated by Gastropods at Three Vent Fields Along the Mid-Atlantic Ridge: Diversity, Structure, Composition and Trophic Interactions. Frontiers In Marine Science , 9, 925419 (15p.). Doi : 10.3389/fmars.2022.925419

Schrieke, H., Maignien, L., Constancias, F., Trigodet, F., Chakloute, S., Rakotoarivony, I., Marie, A., L'Ambert, G., Makoundou, P., Pages, N., Murat, E. A., Weill, M., Sicard, M., Reveillaud, J. (2022). The mosquito microbiome includes habitat-specific but rare symbionts. Computational And Structural Biotechnology Journal, 20, 410-420. Doi : 10.1016/j.csbj.2021.12.019

Shimabukuro, M., Zeppilli, D., Leduc, D., Wenzhöfer, F., Berg, P., Rowden, A. A., Glud, R. N. (2022). Intra- and inter-spatial variability of meiofauna in hadal trenches is linked to microbial activity and food availability. Scientific Reports, 12(1), 4338 (11p.). Doi : 10.1038/s41598-022-08088-1

Soto Vega, P. J., Costa G., A., Feitosa, Raul Q., Ortega Mabel, X., Bermudez, J., D., Turnes, J. N. Domain-Adversarial Neural Networks for Deforestation Detection in Tropical Forests. IEEE Geoscience and Remote Sensing Letters. In press. Doi : 10.1109/LGRS.2022.3163575 

Soto Vega, P. J., Costa, G. A. O. P., Ortega, M. X., Bermudez, J. D., Feitosa, R. Q. (2022). Deforestation Detection With Weak Supervised Convolutional Neural Networks In Tropical Biomes. The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, XLIII-B3-2022, 713-719. Doi : 10.5194/isprs-archives-XLIII-B3-2022-713-2022 , Open Access version : https://archimer.ifremer.fr/doc/00775/88682/

Van Audenhaege, L., Matabos, M., Brind'Amour, A., Drugmand, J., Laës-Huon, A., Sarradin, P-M., Sarrazin, J. Long-term monitoring reveals unprecedented stability of a vent mussel assemblage on the Mid-Atlantic Ridge. Progress in Oceanography. Doi.org/10.1016/j.pocean.2022.102791

Van denderen, P. D., Holah, H., Robson, L. M, Hiddink, J. G., Menot, L., Pedreschi, D., Kazanidis, G., Llope, M., Turner, P. J, Stirling, D., Murillo, F. J., Kenny, A., Campbell, N., Allcock, A. L., Braga-Henriques, A., González-Irusta, J. M, Johnston, G., Orejas, C., Serrano, A., Xavier, J. R, Hopkins, P., Kenchington, E., Nixon, E., Valanko, S., Hoel Alf Hakon (2022). A policy-based framework for the determination of management options to protect vulnerable marine ecosystems under the EU deep-sea access regulations. Ices Journal Of Marine Science, 79(1), 34-49. Doi : 1093/icesjms/fsab237

Versteegh, E. A.A., Van Dover, C. L., Van Audenhaege, L., Coleman, M. (2022). Multiple nutritional strategies of hydrothermal vent shrimp (Rimicaris hybisae) assemblages at the Mid-Cayman Rise. Deep Sea Research Part I: Oceanographic Research Papers (0967-0637) (Elsevier BV) In Press. Doi : 10.1016/j.dsr.2022.103915

Wang, S., Jiang, L., Xie, S., Alain, K., Wang, Z., Wang, J., Liu, D., Shao, Z. (2022). Disproportionation of Inorganic Sulfur Compounds by Mesophilic Chemolithoautotrophic Campylobacterota. mSystems. 2022 Dec 21:e0095422. Doi: 10.1128/msystems.00954-22

Weaver, P.PE. Billett, D.S.M., Qian, P.Y., Sarrazin, J. (2022). Editorial: Understanding ocean ridges, a new frontier for science and development. Frontiers in Marine Science. Volume 9 - 2022. Doi : 10.3389/fmars.2022.1098359

Yunda-Guarin, G., Michel, L., Nozais, C., Archambault, P. (2022). Interspecific differences in feeding selectivity shape isotopic niche structure of three ophiuroids in the Arctic Ocean. Marine Ecology Progress Series, 683, 81-95. Doi : 10.3354/meps13965

Yvenou, S., Allioux, M., Slobodkin, A., Slobodkina, G., Jebbar, M. & Alain, K. (2022). Genetic potential of Dissulfurimicrobium hydrothermale, an obligate sulfur-disproportionating thermophilic microorganism. Microorganisms. 10, 60. Doi.org/10.3390/microorganisms10010060